0.1.0b2

Warning

period_cut (in seconds) has been replaced by high_pass (in Hz) in FirstLevelModel & design matrices.
This is a code-breaking change. Please update your code accordingly.

New

Changes

  • Nistats now uses BIDS v1.2 & BIDS Derivatives terminology.

Fixes

Contributors

The following people contributed to this release (in alphabetical order)

Ana Luisa Pinho Anthony Gifuni Bertrand Thirion Christopher J. Markiewicz Christophe Pallier Gael Varoquaux Jerome Dockes Jerome-Alexis Chevalier Jessica Thompson Kshitij Chawla (kchawla-pi) Takis Panagopoulos Tuan Binh Nguyen

0.0.1b

Changelog

  • Updated the minimum versions of the dependencies
    • Numpy >= 1.11

    • SciPy >= 0.17

    • Nibabel >= 2.0.2

    • Nilearn >= 0.4.0

    • Pandas >= 0.18.0

    • Sklearn >= 0.18.0

  • Added comprehensive tutorial

  • Second-level model accepts 4D images as input.

  • Changes in function parameters
    • third argument of map_threshold is now called level.

    • Changed the defaut oversampling value for the hemodynamic response to 50 and exposed this parameter.

    • changed the term paradigm to events and made it BIDS-compliant. Set the event file to be tab-separated

    • FirstLevelModel.compute_contrasts parameter output_type can take the value 'all', returning a dictionary of images for each output type

  • Certain functions and methods have been renamed for clarity
    • nistats.design_matrix
      • make_design_matrix() -> make_first_level_design_matrix()

      • create_second_level_design() -> make_second_level_design_matrix()

    • nistats.utils
      • pos_recipr() -> positive_reciprocal()

      • multiple_fast_inv() -> multiple_fast_inverse()

  • Python2 Deprecation:

    Python 2 is now deprecated and will not be supported in a future version. A DeprecationWarning is displayed in Python 2 environments with a suggestion to move to Python 3.

Contributors

The following people contributed to this release:

45  Bertrand Thirion
70  Kshitij Chawla
16  Taylor Salo
 6  KamalakerDadi
 5  chrplr
 5  hcherkaoui
 5  rschmaelzle
 4  mannalytics
 3  Martin Perez-Guevara
 2  Christopher J. Markiewicz
 1  Loïc Estève

0.0.1a

Changelog

First alpha release of nistats.

Contributors (from git shortlog -ns):

223  Martin Perez-Guevara
195  bthirion
 24  Gael Varoquaux
  9  Loïc Estève
  3  AnaLu
  2  Alexandre Gramfort
  1  DOHMATOB Elvis
  1  Horea Christian
  1  Michael Hanke
  1  Salma
  1  chrplr